Protein Info for GFF3504 in Variovorax sp. SCN45

Annotation: BUG/TctC family periplasmic protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03401: TctC" amino acids 53 to 325 (273 residues), 286.8 bits, see alignment E=7.3e-90

Best Hits

Swiss-Prot: 38% identical to YTCB_PSESQ: UPF0065 protein in tcbD-tcbE intergenic region from Pseudomonas sp. (strain P51)

KEGG orthology group: None (inferred from 92% identity to vap:Vapar_5000)

Predicted SEED Role

"Tricarboxylate transport protein TctC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>GFF3504 BUG/TctC family periplasmic protein (Variovorax sp. SCN45)
MIRRHLGTLAIALALPLAFTAPLAHAQNAAAYPAKPVRMIVPFPPGGGTDILARLVAQKL
TEVNHWTVVPDNRAGAGGTIGIAEAARAAPTGYDIVMGQKDNMVVAPWLYKNLSYNPVKD
LTAVAHVAYTPVVIVTQANSKFKTLDDVVKAARAAPDTITYGSPGNGTTIHLAGEIFNGA
AKIKMRHVPYKGSNAAMMDVLAGNVDLMVSSVPSAMAQIKAGKLRPLAVTSAKRSTSLPD
TPTVAELGYKDFDVSTWYGLFVPAGTPKEVVATLNAEVNKLLATPEMNAAIIAQGAEPQS
MTPEQFGKLLKTDYEKWKSIVQASGATIE