Protein Info for GFF35 in Variovorax sp. SCN45

Annotation: FOG: Ankyrin repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 226 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF12796: Ank_2" amino acids 29 to 119 (91 residues), 46.5 bits, see alignment E=1.1e-15 amino acids 84 to 150 (67 residues), 55 bits, see alignment E=2.5e-18 amino acids 148 to 215 (68 residues), 37.6 bits, see alignment E=6.8e-13 PF00023: Ank" amino acids 92 to 119 (28 residues), 21.6 bits, see alignment (E = 5.1e-08) amino acids 121 to 150 (30 residues), 26.4 bits, see alignment 1.6e-09 amino acids 153 to 184 (32 residues), 30.4 bits, see alignment 7.9e-11 PF13637: Ank_4" amino acids 93 to 141 (49 residues), 31.1 bits, see alignment 5.8e-11 amino acids 122 to 174 (53 residues), 41.5 bits, see alignment E=3.1e-14 amino acids 155 to 204 (50 residues), 26 bits, see alignment E=2.3e-09 PF13606: Ank_3" amino acids 121 to 145 (25 residues), 24.8 bits, see alignment (E = 4.7e-09) amino acids 156 to 179 (24 residues), 21 bits, see alignment (E = 7.9e-08) PF13857: Ank_5" amino acids 140 to 194 (55 residues), 33.6 bits, see alignment E=1e-11

Best Hits

KEGG orthology group: K06867, (no description) (inferred from 86% identity to vpe:Varpa_3099)

Predicted SEED Role

"FOG: Ankyrin repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (226 amino acids)

>GFF35 FOG: Ankyrin repeat (Variovorax sp. SCN45)
MKNYFKKSIYLIVIAASFAAHAGSFEDFFRAVRGDNASGVRSLLQRGFDPNTLDEHGQTG
LLIALREPSPKVIKVLIDAPQTNVDIASPKDETPLMLAAIKGQQDVVAQLLKRDAAVNKT
GWTPLHYAATSGQIAIMKVLLENFAFIDAQSPNGTTPLMMAAMYGSNDAVKLLLDEGADT
TMKNQLGMTAVDFANKANRAEAASMITAAAGARANAAKAVPKDGKW