Protein Info for PS417_17785 in Pseudomonas simiae WCS417

Annotation: 4-amino-4-deoxy-L-arabinose transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 113 to 131 (19 residues), see Phobius details amino acids 163 to 192 (30 residues), see Phobius details amino acids 204 to 225 (22 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 290 to 308 (19 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details amino acids 347 to 366 (20 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details amino acids 404 to 424 (21 residues), see Phobius details PF02366: PMT" amino acids 9 to 237 (229 residues), 107.6 bits, see alignment E=7.7e-35 PF13231: PMT_2" amino acids 61 to 223 (163 residues), 66.6 bits, see alignment E=3.3e-22

Best Hits

Swiss-Prot: 68% identical to ARNT2_PSEF5: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase 2 (arnT2) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: K07264, 4-amino-4-deoxy-L-arabinose transferase [EC: 2.-.-.-] (inferred from 90% identity to pfs:PFLU4004)

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.-.-.-

Use Curated BLAST to search for 2.-.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZ15 at UniProt or InterPro

Protein Sequence (551 amino acids)

>PS417_17785 4-amino-4-deoxy-L-arabinose transferase (Pseudomonas simiae WCS417)
MTRLKPLPILLLAFVAFYLLPLGLHGLWTPDETRYAQISQEMLQSGNWIAPHFMGIRYFE
KPAGGYWLIALGQAVFGQNLFGVRIASALTTGLSVLLAYLIARRLWKDPRKSFACALLYL
SFGLVAGQAGYSNLDPQFTLWVNLSLVALWFAFDSSTLRGRLWAWAVVGLACALGFLTKG
FLALVLPVLIAVPYMLWQRRLGELLCYGPLAMLVCLLVCVPWALAVHLQEPDFWRFFFWN
EHIRRFSADNAQHVRPWWFFLPIIAVACLPWAGLLPTTLRKAWQEKRQPAIAFLALWLLL
PLGFFSLSKGKLPTYIMPCLLPLALLMGHTLVNLINNGRARTLCLNGLLNFLIGMAAMIV
LIYLQIARPLYSNSHAEMFSLSLAFIVLLVWILTNLLQAFRPLTLWAMPTLGIGVLVILL
PASMPEWIADNEMPDQFVLEHLEELQQTQALLSNELGNASALAWRLKRPEVALYDTEGEL
RYGLQYAGSVHRKVGLEDVQAWLKEKRLIGSVGVLMRVNSTREMREAGQLPPGGKRYYKG
SLELIIYPQSP