Protein Info for GFF3471 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF06537: DHOR" amino acids 152 to 417 (266 residues), 156.4 bits, see alignment E=9.4e-50 PF00034: Cytochrom_C" amino acids 297 to 417 (121 residues), 21.8 bits, see alignment E=3.9e-08

Best Hits

KEGG orthology group: None (inferred from 78% identity to xau:Xaut_3195)

Predicted SEED Role

"Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>GFF3471 hypothetical protein (Xanthobacter sp. DMC5)
VSVRVRLLLALLAALTATPAAAETLDKLDLAIGKALFKRPWVPAPASTRGDDGLGPLFDA
RSCATCHPADRRAPARLENGTAERGFVLMIGRPDGTGDPVYGRRFQIDAVPGIPGEGMIG
VTDTPLSDGRIVRKPHPEALGYGPLDPASGLSLRVGPDLKGRGALAAVPDAAILAVEREQ
AKGTDGVKGMARRVSLADGSTAIGRFGWKASQPDLARQSAEAFFLDLGLSNRFHPEPWGD
CTPTQTACRQALHGNANATSGDADDELEIGSAVLDRVVAYVASLPQPEPEDLPKAEAKRG
AVLFTSTGCAQCHRPSLPTAGGGTARMYTDLLLHEMGPDLGDTMPEPGVGASQWRTAPLA
GLSDALAANTGLLHDGRARTVEEAIAWHGGEAATAQRRFGALPPKDRAALVRYVSSL