Protein Info for PS417_17765 in Pseudomonas simiae WCS417

Annotation: iron ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF07143: CrtC" amino acids 59 to 231 (173 residues), 205.9 bits, see alignment E=7e-65 PF17186: Lipocalin_9" amino acids 234 to 353 (120 residues), 140.3 bits, see alignment E=3.9e-45

Best Hits

KEGG orthology group: None (inferred from 89% identity to pfs:PFLU4000)

Predicted SEED Role

"AttH component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U8V0 at UniProt or InterPro

Protein Sequence (353 amino acids)

>PS417_17765 iron ABC transporter permease (Pseudomonas simiae WCS417)
MKIKCLLWTFLLLAACDKVPAPQESFAGLGSDAADFAQVVPGKVFSFPEDHGPHAGFRIE
WWYVTANLRDEQGNVFGVQWTLFRNALKAGPTQAGWRDSTIWLGHAAVTSATQHYAAERY
ARGGVGQAGAQAKPFNAWIDDWNFVSRPGAASSLADMQLKASGAQFAYDLHLTSSRPLVL
QGDNGYSRKSDLGQASYYYSQPFFSASGSVTLDGKVYQVTGPAWLDREWSSQPLSASQTG
WDWFSLHLDRGEQLMLFRVRQTNGTGYLTGTWIDAQGQTQTLHNADIQLVPLETSTIDGR
KIPTRWSLKIPAKQLDITTQAVNPNAWMNLSIPYWEGPVQFEGGVGYLEMTGY