Protein Info for GFF3462 in Variovorax sp. SCN45

Annotation: Urea ABC transporter, permease protein UrtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 68 to 85 (18 residues), see Phobius details amino acids 107 to 131 (25 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 237 to 258 (22 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 314 to 336 (23 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 29 to 337 (309 residues), 404.1 bits, see alignment E=2.9e-125 PF02653: BPD_transp_2" amino acids 36 to 327 (292 residues), 121 bits, see alignment E=2.6e-39

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 91% identity to vei:Veis_4908)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (351 amino acids)

>GFF3462 Urea ABC transporter, permease protein UrtC (Variovorax sp. SCN45)
MGMKLSPQRRSDLAGMAAVLLLLAVVLPATLDPFRLNLVSKYLAFAFVAVGVVLTWGYGG
VLSLGQGMFFGLGGYMMAMFLKLEASAPELPDFMVWSSVDQLPSWWIPFHSLGWTIVGIL
VVPAVLAYVFSYAIFKRRVSGVYFAIVTLSLALTLTVVVIGQQGDTGGANGITDFRTLLG
LDIAGDDAKRTMYFVEVLAIALVMAVSLVIVRSRFGKILIAIRDREDRVRFSGYNTAHMK
AFVFAVAAVLSSIGGAFYSLQVGLIAPGVIGVVASVEMVIYAAVGGRLSIPGAVIGALLI
GFLKSYLSETFPEGWLYFLGAVFILVVWAMPDGLAGLGARLLRRRGAEAVP