Protein Info for GFF3461 in Variovorax sp. SCN45

Annotation: Urea ABC transporter, ATPase protein UrtD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 TIGR03411: urea ABC transporter, ATP-binding protein UrtD" amino acids 26 to 266 (241 residues), 368.9 bits, see alignment E=6.3e-115 PF00005: ABC_tran" amino acids 43 to 196 (154 residues), 109.5 bits, see alignment E=3.1e-35 PF12399: BCA_ABC_TP_C" amino acids 243 to 266 (24 residues), 38.5 bits, see alignment (E = 1e-13)

Best Hits

Swiss-Prot: 35% identical to LIVG_SALTI: High-affinity branched-chain amino acid transport ATP-binding protein LivG (livG) from Salmonella typhi

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 86% identity to vei:Veis_4907)

MetaCyc: 35% identical to branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivG (Escherichia coli K-12 substr. MG1655)
ABC-15-RXN [EC: 7.4.2.2]; 7.4.2.2 [EC: 7.4.2.2]; 7.4.2.2 [EC: 7.4.2.2]; 7.4.2.2 [EC: 7.4.2.2]

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtD" in subsystem Urea decomposition

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>GFF3461 Urea ABC transporter, ATPase protein UrtD (Variovorax sp. SCN45)
MNATMTMPNGGLPQAASAVPPSNEQILRVEDLTVSFDGFKAVDGLSLAVERNELRVIIGP
NGAGKTTLLDMVCGKTKPSSGRVLFNGTDLARMNEHEIVRAGVGRKFQTPSVYEDLTVLE
NFEISLPRMHGLLQSLAFRRTAALRERIDAMAADVFLLDQLDRRAGQLSHGQKQWLEIGM
LLMQEPELLLLDEPVAGMSPREREQTGDLLRRISPGKSVVVIEHDMDFVKRIAHRVTVLH
QGRLLSEGTAAEVQADPRVIDVYLGH