Protein Info for GFF3457 in Variovorax sp. SCN45

Annotation: Nitric oxide reductase activation protein NorD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 PF00092: VWA" amino acids 400 to 520 (121 residues), 30 bits, see alignment E=5.9e-11

Best Hits

KEGG orthology group: None (inferred from 74% identity to vei:Veis_4903)

Predicted SEED Role

"Nitric oxide reductase activation protein NorD" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (550 amino acids)

>GFF3457 Nitric oxide reductase activation protein NorD (Variovorax sp. SCN45)
MNDGRGGCSGHGALALLARGLAGVDVDVQALTGAGTRAVLTGRKLLLPEGASEPGLRRAM
VAHAVAHLRHSRPARPAHTLRPMGIAVVSAIEDARVERLLFRDFPGLHGWFAASLPPVPD
ALDLRFAALVARMDRLLLMPDARDDNHWVNKARRLFDETAASAGLEDYDAFRAIASILAN
DLGQMRVRFEPQDYAVPAPWRDDNSYLWDFAETETAPDEAIALKQTGARPSPPSDAQDEG
SAPPPDAAGDIELGRYTYPEWDRKLERLRPDWCTVIEKLPAWQGLLPTREQAAAGTERIA
PLALPRARHLDRTHRLRRQWEGDDIDLNAAIEVLVDRRLRLRPDARLFMRPGKGPRPSSV
LVLLDLSASANDAGPHAASLLDLEKQAALMLAASNARGIDRLAIHGFSSNTRAEVYYYRL
LESGRPLDAPTSAMIGALRGRYSTRMGAALRHATALMRAEPPGQRAVLLVTDGAPSDIDV
HDPQYLIEDARQAVAEARDAGVRIACIAVDGAADAYVRRIFGWRNYCIADDTRSLPARLA
RMSARLAAAH