Protein Info for GFF3424 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Protein sirB1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 PF13369: Transglut_core2" amino acids 47 to 204 (158 residues), 176 bits, see alignment E=3.9e-56 PF13371: TPR_9" amino acids 206 to 278 (73 residues), 74.7 bits, see alignment E=4.9e-25

Best Hits

KEGG orthology group: None (inferred from 74% identity to pna:Pnap_3003)

Predicted SEED Role

"Protein sirB1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (285 amino acids)

>GFF3424 Protein sirB1 (Hydrogenophaga sp. GW460-11-11-14-LB1)
MPTAYEYPAPTPLGYFAALVGDDDALPLFEAATAIAQDEYPDLDVQQVLGDVDQMLARVR
RRCAADAGPLQRLRTLNQFFFRDMGFGGNVNNYYDPDNSFLNAVLRTRRGIPITLAVLWL
ELAQGLGLKARGVNFPGHFMVKVNLPNGQVVIDPFTGQSLSREDLSERLEPYKRRNGLVD
DFDVPVGLYLQAATPREILARLLRNLKEIHRTQEDWLRLIAVLDRLLILLPDAWIEYRDR
GLAWAEMGDVRLAVGDLETYVEHADDTLDRDAIDQRLQELRRALS