Protein Info for GFF3417 in Variovorax sp. SCN45

Annotation: Alkanesulfonates transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 transmembrane" amino acids 9 to 27 (19 residues), see Phobius details amino acids 63 to 88 (26 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details amino acids 177 to 201 (25 residues), see Phobius details amino acids 222 to 244 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 79 to 252 (174 residues), 71.8 bits, see alignment E=3.2e-24

Best Hits

KEGG orthology group: None (inferred from 92% identity to vpe:Varpa_0118)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>GFF3417 Alkanesulfonates transport system permease protein (Variovorax sp. SCN45)
MIENRLLRWARPWVVPLVLIGAFEWYARRASALGSDSLAPPSAAARAFVGAAMDGSLWQA
TGFTLGTAALGLLLGAVLGIALGLVLGLSRRAAQLGSMSIEVLRPVPSVALIPLAMLGFG
FGVRMELAIVAFATFWPLLVLVQAAVQQVEPRLLEVSRVLGLSARERAFKIVLPAIVPRL
FVALRLGVAVALVVAVTVEIAANPNGMGYAMMIAQQSFDPALMLAWLGWIGVVGFAVNAG
MLLLQRMVARRMGVQP