Protein Info for PS417_17370 in Pseudomonas simiae WCS417

Annotation: C4-dicarboxylate ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF03480: DctP" amino acids 26 to 304 (279 residues), 251.9 bits, see alignment E=4.2e-79 TIGR00787: TRAP transporter solute receptor, DctP family" amino acids 33 to 281 (249 residues), 215.5 bits, see alignment E=4.5e-68

Best Hits

Swiss-Prot: 45% identical to DCTP1_POLSJ: Solute-binding protein Bpro_3107 (Bpro_3107) from Polaromonas sp. (strain JS666 / ATCC BAA-500)

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU3951)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UDZ2 at UniProt or InterPro

Protein Sequence (320 amino acids)

>PS417_17370 C4-dicarboxylate ABC transporter (Pseudomonas simiae WCS417)
MDFKRTLLAAACFALSSAAHALEIKFADIHPAGYPTVVAEENMGKALTQASNGELTFKYF
PGGVLGSEKEVVEQAQVGAIQMTRVSLGIVGPVVPDVNVFNLPFVFRDQAHMRKVIDGEI
GDEILAKITDSEFGLVALAWMDGGTRNLYTKKPVRKIEDLKGMKIRVQGNPLFIEAFNEM
GANGIAMDTGEIFSALQTGVIDGAENNPPTLLEHNHFQNAKYYTLTEHLILPEPIVMSKI
TWNKLTPAQQDMVKKAAKAAQADERVLWDAKSASSETKLKAAGVEFITVDKKPFYDATAP
VRAKYGAAYADIIQRIDAVQ