Protein Info for GFF3383 in Sphingobium sp. HT1-2

Annotation: protein of unknown function LppY and LpqO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07485: DUF1529" amino acids 27 to 145 (119 residues), 153 bits, see alignment E=1.6e-49 amino acids 172 to 289 (118 residues), 145.8 bits, see alignment E=2.7e-47

Best Hits

KEGG orthology group: None (inferred from 63% identity to bid:Bind_2528)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>GFF3383 protein of unknown function LppY and LpqO (Sphingobium sp. HT1-2)
MLKKTIALGFASLLLASPAWAAPDWSAVDRAIGRAGAEQPGGVHRYSFPRSDLSVTLDGV
TIKPSLALGSWAAFQPMGDEAMVMGDLVLTHDEVNPVLSRLLASGFTITALHNHLLRSSP
ATMYMHIAGHGDPVKLAAALRQALSASRTPLAAPQSPSASAAASRLDLDVAALNRLMGGE
GKTAGGILQYSFPRAERLMDGDMETPPTMGTATAINFQPTGDGRAAITGDFVLVANEVDP
VLRVLRTNGIEVTALHNHMLNDEPRLFFMHFWANDDAAKLARGLRAALDRMNNQRS