Protein Info for PS417_17300 in Pseudomonas simiae WCS417

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 11 to 467 (457 residues), 398.8 bits, see alignment E=1.7e-123 PF02321: OEP" amino acids 67 to 258 (192 residues), 90 bits, see alignment E=8.9e-30 amino acids 280 to 465 (186 residues), 94.4 bits, see alignment E=4e-31

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU3938)

Predicted SEED Role

"FIG00608533: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3D8 at UniProt or InterPro

Protein Sequence (472 amino acids)

>PS417_17300 RND transporter (Pseudomonas simiae WCS417)
MRPRLKPLAALMLLALQGCSMAPTYQVPAVDLPAGYREQTSDGPWHSAQPSDQLAPEWWT
LYNDSRLNDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLRQRQSDS
RPLRGDTQPSVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSLQHQL
ATLYVQLNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAKAQWD
EIRGQRNLTEHAIGELVGVAASDFSLSPSPQLISLPGIPSQLPSHLLQRRPDIAAAERRV
FAANANIGVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALGPLVNLPIFDGGRLSA
NERQAKAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQEAQDEQAAADAAQHTQSLAMN
SYQAGAVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALGGGWHASN