Protein Info for GFF3367 in Variovorax sp. SCN45

Annotation: Septum site-determining protein MinC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 TIGR01222: septum site-determining protein MinC" amino acids 12 to 256 (245 residues), 181 bits, see alignment E=1.5e-57 PF05209: MinC_N" amino acids 13 to 92 (80 residues), 64.5 bits, see alignment E=7.7e-22 PF03775: MinC_C" amino acids 153 to 253 (101 residues), 103.7 bits, see alignment E=5e-34

Best Hits

KEGG orthology group: K03610, septum site-determining protein MinC (inferred from 91% identity to vpe:Varpa_0075)

Predicted SEED Role

"Septum site-determining protein MinC" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>GFF3367 Septum site-determining protein MinC (Variovorax sp. SCN45)
MADVSAARTKAVFEFKSATLPLIAVILKTSDLDVLAEALDAQLADSPDFFEQEPVVIDLS
LLQEAQGEGGEAAGDIDFAALRSLLARHQTQPIAVRGGNAAQHAAARAAGLSVAAMPSAP
APRPPVPPAEPAPSEAPQIVREVPVPANGTLLIDKPLRSGQQVYARGGDVVVTAVVSFGA
EVIADGNVHVYAPLRGKAIAGARGNTEARIFSTCMEAQLVAIAGIYRTNEVALPDSVLGK
SAQVRLDGKKIAIDPIP