Protein Info for PS417_01700 in Pseudomonas simiae WCS417

Annotation: lipocalin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF08212: Lipocalin_2" amino acids 33 to 179 (147 residues), 194 bits, see alignment E=6.3e-62

Best Hits

KEGG orthology group: K03098, outer membrane lipoprotein Blc (inferred from 98% identity to pfs:PFLU0357)

Predicted SEED Role

"Outer membrane lipoprotein Blc"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TX26 at UniProt or InterPro

Protein Sequence (189 amino acids)

>PS417_01700 lipocalin (Pseudomonas simiae WCS417)
MMRFVLFLCASLFLAGCASHSGDDLQPKTAGSVNLKRYQGTWYELARLPMYFQRNCAQSE
ARYTLLPDGDMSVFNRCLTTEWKWEEAKGTATPQVPGKTDKLWVEFNNWFTALLPGVAKG
DYWVLYVSDDYKTAIVGSPSRRYMWILSRTPTVNADTREDLLSRARQQGYDTTRLIWRTS
DKQMAKTSQ