Protein Info for PS417_17055 in Pseudomonas simiae WCS417

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 47 to 67 (21 residues), see Phobius details amino acids 78 to 95 (18 residues), see Phobius details amino acids 101 to 124 (24 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details amino acids 302 to 324 (23 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 365 to 386 (22 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 273 (257 residues), 115.4 bits, see alignment E=1.4e-37 amino acids 220 to 396 (177 residues), 43.4 bits, see alignment E=1.1e-15

Best Hits

KEGG orthology group: None (inferred from 76% identity to pfl:PFL_3944)

Predicted SEED Role

"MFS permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBJ3 at UniProt or InterPro

Protein Sequence (425 amino acids)

>PS417_17055 transporter (Pseudomonas simiae WCS417)
MRMSSSPLSGAVVLLLAVACGLSVANVYYAQPLLDAMAETFAMDHATVGIIIALTQVGYG
VGLLLLVPLGDLLNRRRLIVSQLLLSTLAVLMVGWSSSSFWLLAGMALTGLLAVVAQVLV
ALAAHLASPEQRGHVVGLVTSGIVVGLLLARSVSGAMADLAGWRSVYLLSAGLTLLMAIL
LWRVLPSTEPPRASGTYGALIRSVFSLFKEEKVLRDRAVLAMLIFAAGTVLWTPLVLPLS
APPLSLSHTQIGLFGLAGATGALGAAHAGRLADQGLAQWTSGTALLLMLLSWVAIGFTQS
SLWALLLGVIVFDLGLQAVHVTSQSLIYAVRPNAQSRLVAGYMLFYSVGSALGSISATAM
YAWGGWIGVCVLGAAINLLALVYWLATLPPKPVSVLAAGHALQHAVTTDQPVEQGRRQVQ
QHRQE