Protein Info for GFF3327 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Glucans biosynthesis protein C (EC 2.1.-.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 139 to 160 (22 residues), see Phobius details amino acids 181 to 203 (23 residues), see Phobius details amino acids 210 to 232 (23 residues), see Phobius details amino acids 244 to 262 (19 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 306 to 330 (25 residues), see Phobius details amino acids 337 to 356 (20 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 10 to 356 (347 residues), 134.7 bits, see alignment E=2.1e-43

Best Hits

Swiss-Prot: 100% identical to OPGC_SALTY: Glucans biosynthesis protein C (mdoC) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K11941, glucans biosynthesis protein C [EC: 2.1.-.-] (inferred from 100% identity to sty:STY1186)

Predicted SEED Role

"Glucans biosynthesis protein C (EC 2.1.-.-)" (EC 2.1.-.-)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>GFF3327 Glucans biosynthesis protein C (EC 2.1.-.-) (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MSSVPAPREYFLDSIRAWLMLLGIPFHISLIYSTHSWHVNSAAPSWWLTLFNDFIHAFRM
QVFFVISGYFSYMLFLRYPLKHWWKVRVERVGIPMLTAIPLLTLPQFILLQYVKEKTENW
PTLSAYEKYNTLAWELISHLWFLLVLVILTTVSIGIFTWFQKRQETSKPRPAAISLAKLS
LIFFLLGVAYAAIRRIIFIVYPAILSDGMFNFIVMQTLFYVPFFILGALAFIHPDLKARF
TTPSRGCTLGAAVAFIAYLLNQRYGSGDAWMYETESVITMVMGLWMVNVVFSLGHRLLNF
QSARVTYFVNASLFIYLVHHPLTLFFGAYITPHISSNLIGFLCGLIFVMGIALILYEIHL
RIPLLKFLFSGKPPVKRESRATIG