Protein Info for GFF3326 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 PF13673: Acetyltransf_10" amino acids 48 to 139 (92 residues), 45.4 bits, see alignment E=1.6e-15 PF00583: Acetyltransf_1" amino acids 50 to 132 (83 residues), 43.3 bits, see alignment E=8.5e-15 PF13508: Acetyltransf_7" amino acids 51 to 134 (84 residues), 51.9 bits, see alignment E=1.6e-17 PF08445: FR47" amino acids 75 to 136 (62 residues), 27.1 bits, see alignment E=6.6e-10

Best Hits

KEGG orthology group: None (inferred from 85% identity to vpe:Varpa_0042)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (153 amino acids)

>GFF3326 hypothetical protein (Variovorax sp. SCN45)
MNDTSWTLRRADAADASSITECAVEAFRHYIPRLGLTPLPMTKDYGIAIANAQVWVATQQ
AQTVAALVLDVTDEGFLIDVIAVRPQHQGTGVGRALLELAEREALRQGHDSIYLFTNEKM
TENRSLYERIGYVEYKRHVLEQRTRVFLRKPLK