Protein Info for PS417_16985 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF12727: PBP_like" amino acids 79 to 238 (160 residues), 29.8 bits, see alignment E=4.9e-11 PF12849: PBP_like_2" amino acids 84 to 295 (212 residues), 110.1 bits, see alignment E=2.5e-35 PF00691: OmpA" amino acids 342 to 436 (95 residues), 66 bits, see alignment E=4.8e-22

Best Hits

KEGG orthology group: K02040, phosphate transport system substrate-binding protein (inferred from 92% identity to pfs:PFLU3883)

Predicted SEED Role

"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)" in subsystem High affinity phosphate transporter and control of PHO regulon or Phosphate metabolism (TC 3.A.1.7.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TYR9 at UniProt or InterPro

Protein Sequence (443 amino acids)

>PS417_16985 membrane protein (Pseudomonas simiae WCS417)
MMLRVLFLLALFPLYAVSAPLPAPDQGPALRIQGSNTIGAALGPALVKGLMEHQGLQAVH
GEPAEGANEQRVIGKTRQGKTVIIEIAAHGSSTGFTALKKSTADLAASSRPIKDSELVDL
EPLGDLKSPEAEQVIAIDGLAIILHPQNPLNTLNTEQLAQVFNGEISTWEALGGVGGPIH
VYARDDQSGTYDTFKELVLRLRGKSLASGATRFESSEQLSDSVSQDPQGIGFIGLPYVRQ
AKAVAIVDGDSHPMLPLNSLIATEDYPLSRRLFFYLPPSSRNPWAKALVDFSQSSKGQAI
VAANGFIAQQVQAIAVEPRASMPEDYQAIARDAQRLTVNFRFEEGSASLDNKARQDLQRV
VAYLKSHDKLDKQVTLVGFGDAKNDPQRAALLSKLRAMAVRRELVKNGVVLRDIRGFGAQ
MPVAANTADEGRIKNRRVEVWVY