Protein Info for GFF3318 in Xanthobacter sp. DMC5

Annotation: D-apiose dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 PF01408: GFO_IDH_MocA" amino acids 5 to 112 (108 residues), 77.4 bits, see alignment E=3e-25 PF03807: F420_oxidored" amino acids 6 to 86 (81 residues), 21.7 bits, see alignment E=5e-08 PF22725: GFO_IDH_MocA_C3" amino acids 132 to 263 (132 residues), 44.6 bits, see alignment E=2.9e-15 PF02894: GFO_IDH_MocA_C" amino acids 139 to 327 (189 residues), 39.4 bits, see alignment E=1.2e-13

Best Hits

KEGG orthology group: None (inferred from 63% identity to met:M446_1313)

Predicted SEED Role

"FIG00933601: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (339 amino acids)

>GFF3318 D-apiose dehydrogenase (Xanthobacter sp. DMC5)
MAAPIRVGLIGAGWVTQHHLKGWAALGDAAQVVAIADPSAERAAERAGAFGIPAVFTSAE
AMLQAGGLDAVDIAAPRAVHAELARLAARHGLPILCQKPLAPTLPEAEQLVADIGGQVRL
MVHENWRFRAYYRQAAQWLRAGRIGAVRAAHLSLVTSGTVPDAEGRFQALERQPFMREER
RMLVAEVLIHHLDTLRMLLGPLKVEAAALSRTCNALAGEDGAVIQLSTADGAGVSIFASF
AAYGVPAQQADRLAILGEAGTLRLDGTALSLAGPEPERLDYDPEATYLGSYAATIAHFVA
GLASGAPFETSPEDNLETLRLVEDCYRLSGFETANRSAA