Protein Info for GFF3303 in Variovorax sp. SCN45

Annotation: Acetyltransferase, GNAT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF00583: Acetyltransf_1" amino acids 156 to 242 (87 residues), 49.5 bits, see alignment E=7.4e-17 PF08445: FR47" amino acids 186 to 249 (64 residues), 33 bits, see alignment E=7.1e-12

Best Hits

KEGG orthology group: None (inferred from 76% identity to vpe:Varpa_0019)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>GFF3303 Acetyltransferase, GNAT family (Variovorax sp. SCN45)
MKLMNPIPETDIEAIERATVAAVAPDLTEELDGWLLPFAEGTVNRAKSAVPLHRGAVDAA
TLDRIEDRYDSRQSVPLLRLADADCFDGLRAELERRHYARDNPTLVQLGSTPRMLQVAEG
RGAPADVDTTPDDAWAALFLGEGFDPVDGAHRVRTLSRAKGTLFASVREDGRTLAAGAMA
FGHGWCSVHGMRTDQAQRGRGLAGRVLAGLAQAAMSRGFERVFLQVDAANPPALALYKRA
GFETCWQYRYWKRA