Protein Info for GFF3302 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Hydroxymethylpyrimidine ABC transporter, transmembrane component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 60 to 82 (23 residues), see Phobius details amino acids 91 to 117 (27 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 206 to 234 (29 residues), see Phobius details PF00528: BPD_transp_1" amino acids 75 to 233 (159 residues), 88 bits, see alignment E=3.4e-29

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 86% identity to vap:Vapar_3961)

Predicted SEED Role

"Hydroxymethylpyrimidine ABC transporter, transmembrane component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>GFF3302 Hydroxymethylpyrimidine ABC transporter, transmembrane component (Hydrogenophaga sp. GW460-11-11-14-LB1)
MHNKHLERWSPLILLVAIVLLWEIVIRAFGVSEFIFPSPSRIWEQTMEHKTTIMGHAWRT
FWVTMAGFGIAIVVGVLLGFLIGSSRLAYAAVYPLMTAFNALPKAAFVPILVVWFGIGVG
PAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGAKRWDVLTKVGLPRSMPYFFGSL
KVAITLAFVGTTVSEMTASNEGIGYLLISAGSSMQMGLAFSGLLVVGAMAMAMYELFSFV
EKHTTGWAHRGSQNT