Protein Info for GFF3284 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1089 PF17871: AAA_lid_9" amino acids 397 to 456 (60 residues), 27.3 bits, see alignment 9.7e-10 PF07724: AAA_2" amino acids 524 to 683 (160 residues), 139.4 bits, see alignment E=4.1e-44 PF00004: AAA" amino acids 529 to 610 (82 residues), 25.7 bits, see alignment 4.9e-09 PF07728: AAA_5" amino acids 529 to 642 (114 residues), 37.4 bits, see alignment E=8.6e-13 PF10431: ClpB_D2-small" amino acids 690 to 761 (72 residues), 40 bits, see alignment 1.2e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1089 amino acids)

>GFF3284 hypothetical protein (Variovorax sp. SCN45)
MSGRGSLRIPVFVTHRKEAGYRLRCLFLPEIDATAMRYEAALNKLRQAVVHHFRGTRSTR
ATLDERLWLGFAPELRFELVPLGFDSGRRWIEGAFAAAHFTVGARRYACLPQLDGMVADL
GELHLDKGQRTERLVASIQAWFREQRKERGDAFDPQRCLAAPNDELGELEISMHLAQGRF
PFESEHDLRAAMRDDGIGDGPTEMARAAVDLNDLYPDELTQAILRDEAIEELGRAIYRPD
GGAGAIVLVGPRGAGKTALVHGALRQFMVSETGRDRAKLQKIWHLDPMRVISGMSVIGQW
QRRMAVLLQHLQFRLRDDFRIARPDHLYCDNLVALLAIGKSSQNTLTLADVLRPLLEKRA
FTMIGEATPEAWQKVQQRDRRFADLFRVIRVDPPPREAAIRIVAWRRAELERQHECRISA
AAVAELLKMERRFAADEVLPGSAIRVLDRLAVRHARGEVGRAEVLAAYTAAYHFREKLFS
RQIGLAPAEAAAHFAARLIGQPEARAQLVDVIALIKSGLAAPGKPLSSLLFIGPTGVGKS
EAAKLLADYLFEDEGGLVRFDMNEYVDGDATGRLIGDAYRPDGQLTAAVRQRRACVLLLD
EIEKAHPSVHDLLLQVLGEGRLTDALGRTTDFSQCVVVLTSNLGAAAASRHTGFVRQEAD
VAHTYREAVERFFRPEFLNRIDQVVGFTPLGADDIAAIARLQLERVLARDGFVRRLTFLN
VSAQALDHLARLGHDETLGARALKRGIERALTQPIAQRLASSHSGQPMLLDVSFGEGGLT
TRATVLDYAVRRAVPLPEDTGSAAGYQALAGIADALHERLRAQLDAAPAEPEALALRALQ
VRLDPLREVLARRSWDLSERRVAPGRTVKQNQPRPREWRVASRQQALDELMVQQDIREFF
EQLFAGASPVRGMDTELVRWQLEIDQLASRADSLGRHGIERVAVEIVPLQTGAGEATVRT
AWADYAALIAQLDLHELPSPRAGVRCFEGIGLRDAFGGECGIHLWYAGDDRPLPLAVRLL
SAEPDAAPEPLPTEIVRIRLEPARPGDHRRLTDLRSGRVRKFSGPLTEEDWRLMLWDSRA
AGRAPAAQD