Protein Info for GFF328 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 792 transmembrane" amino acids 272 to 293 (22 residues), see Phobius details amino acids 299 to 322 (24 residues), see Phobius details amino acids 334 to 360 (27 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (792 amino acids)

>GFF328 hypothetical protein (Xanthobacter sp. DMC5)
MAGEEERLVVALEARIRDFEKNFEKAKAVSNRRFLEIEKRAQQNAVNLKNYFNGSTASIS
SAFEALGGAGIIASGGIAGAITTLKAAATSVADLAAEAQKAGVAFEPFQELKFAAEQARV
GVDALTDGLKEMQLRADEFIRTGAGSSEEAFKRLGYTAAELKQKLQDPAALFEEIIDKMK
RFSKAGQIRISDEIFGGSGGEQFLRFMDQGIGAISKAREEARRLGLIMSDEVAKEAAKVA
KMFDMLALKIEVALKSGVLEGAAALEKYKTEIIAVAAAFGAIAAGAALGPLAASLAATVS
AAVTAAGQLTVAGAATLALAAAQRTAAFASAGLAAALRLVGGPWGIVIAAAVGTIAALAL
RQNQAKVAAEAHKSAMGDLDGAIARVKAGAPGAKEELKALAEQHVTNAEKALADARAELE
YARAVAANQKIGGWAGKYNAKMPTADTAEMTAALEKYISAVELAQKRLDELKGKSESAPS
APAPAPDPSIGYGFKDVQKTMSERLRDLQQEQAQLGMTTQAAAEYKFMMDAINTAQEHNL
KLSPEQLQQLQMLAARYGDVTAAVEKTKASQERQREMQQEAGNLAQSSIMGLIDGTKNWN
DVLKDSIKLLAEMALKAALLGEGPLGSGGGGIVGGLVKSAGSAFSGGTTWYADGGVHTPQ
GPRKLKKYARGGVSRNAAIFGEAGPEAAVPLPDGRRIPVDVRVPISPAETMIRNAFSNNV
SVSPSFVINQPGGGNDGRASDRDNLRAALRDATADIEAMVRKIFTNDMTTMGPMGQAVRA
RFGLNPMRGVGR