Protein Info for PS417_16755 in Pseudomonas simiae WCS417

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 279 to 304 (26 residues), see Phobius details amino acids 329 to 358 (30 residues), see Phobius details amino acids 364 to 388 (25 residues), see Phobius details PF12704: MacB_PCD" amino acids 33 to 247 (215 residues), 93.8 bits, see alignment E=1.9e-30 PF02687: FtsX" amino acids 286 to 397 (112 residues), 65.6 bits, see alignment E=4.6e-22

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 90% identity to pfs:PFLU3848)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBD4 at UniProt or InterPro

Protein Sequence (405 amino acids)

>PS417_16755 ABC transporter permease (Pseudomonas simiae WCS417)
MTERVKSSLRVEQNFSQLLHEAFVSLRTLGKRSILALLGIVIGSSSVVALINIGHNAAVD
AAMIFKDMGTDTLIAQFPPKGASTVPMPARLDLDAVRQTVPGIAHVGALTLFSGPIVFHG
RTVNANLVGSTPDIKDAMRLALQQGRFLSGFDANETYGVIGDQVAQSLGAPGDPLRLGDR
VRINDYLFLIVGILRSQPRAMLMPVQANESLFIPAEGMRRIYATPQIGNLIIRAAPGQDM
ERIAKNVAVALQPQLTDHDVDIQVPQQMIDGMTRQSRTFAYLLLALGAISLVGGGVGVMN
VMLMNVSERRREIGIRMALGARQRDIRNLFLLEAVTLTAVGALCGAVLGLTAAWLYAWLS
GWEFALAIAALPLGVGSTLLVGLFFGIYPAVSASRLQPVEALRDE