Protein Info for PS417_16740 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 53 to 70 (18 residues), see Phobius details amino acids 79 to 97 (19 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 126 to 142 (17 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details PF04632: FUSC" amino acids 26 to 308 (283 residues), 65 bits, see alignment E=5.7e-22 PF13515: FUSC_2" amino acids 40 to 166 (127 residues), 50.5 bits, see alignment E=2.2e-17

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU3845)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UDM8 at UniProt or InterPro

Protein Sequence (352 amino acids)

>PS417_16740 membrane protein (Pseudomonas simiae WCS417)
MHLPVFARRLLRPLLDPYRRYRHAKLIHAVRVSIGLLATILLTTGINLPHGEWASVTMLV
VIGGLQHHGNIGKKAVERAYGTLIGASVGLLLVVQEAYVGQPLLTYLLMSVVCGFFSYHA
IGKGGYTALLSAITVFIVAGHGDNPLSDGLWRTVDILIGIALALAFSFALPLYAVYSWRY
NLASALRDCAQIYSRIINGESVTSDEHLKLLNRLNAAMLQLRSLMPSVSKEVRISMTELD
AIQRHLRLCISTLEILGNTRPDPRDEQAMARMQGVLKAEHRQIRVQLVGMARALKSGVTE
RLERQSHAGVEPALDAPVYSALDGYRLLTLQLAQNVDAMRQRLAKSAGRWKI