Protein Info for GFF3260 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 48 (18 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 111 to 128 (18 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 196 to 229 (34 residues), see Phobius details amino acids 240 to 263 (24 residues), see Phobius details amino acids 346 to 371 (26 residues), see Phobius details amino acids 383 to 403 (21 residues), see Phobius details amino acids 408 to 427 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>GFF3260 hypothetical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MMIALKIATVALFMAAWLRSRTGKTAEISDFFTLSFLIIFVPGFLFNPSGETSLNALHFP
DPAIKKAELAMVAMLLVGSLVMILRRSVESPGQNLPTDMALSTPSRRLTDLAWGASALSV
LIFVALLLDPEFRDFKLNILRFFTFQFEGSDYRFLRNLRYAHSWLIEGALGRARFTVLPI
LFCLMIYPLLTRQRAIAAGMVALVFYVALPASLSKLPVFFFAGYFALLMAAKFPRLLDLR
WISIMSMVAACMAITLLILLYAAQYQSSVINGAVLPLNLAIERIWSEPYSIIVRYFFVYP
DLQPFTGWSGIALVAQLSDIPVRLPDIEVARTTLGPDSGSNPGVFFLGGYAAFGWAGLFV
YILSGWLFLWGLDWLNQRIREPALRTTYFAVMAMNVFFLNQIALQTALLTYGLAMVPLLI
VGLDRLLGVSWHRNMPVNVRA