Protein Info for GFF3258 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 974 PF13569: DUF4132" amino acids 702 to 889 (188 residues), 148 bits, see alignment E=1.5e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (974 amino acids)

>GFF3258 hypothetical protein (Variovorax sp. SCN45)
MAGGGKSKVEGQEARPDGTVRWSKSMREALAQFNDRPCGHCGGLLSDERSLADSLDFFRR
HRSSFYPPRAARLRMLEMHGAGAAELFFEPSPHKEEVADLLAIQDEAVVRFFVAQVKQID
CKNALIKQAARWPLFVLRELLSANPARHQAGAALILELLAANPDWQAPLEAACDERQRDT
LARLQEDASGGVADAAQAAWPALLKRPPWKNRQALPVIPTLALQPLPPTALLHWHKLRPP
QYLQATGDVSDWLAREVRVSRERAEEWAGEFTRHQPEAPAQVRESGNAHKALWMLGLRPE
LIEDVLTNGKEVGPDDFGPLPDARWGAAEYLWLLPQPLAVAVFTHGPAPSHYMDDVSRVR
PILHAFGAAALPGLQRVLKQGSRAMFELASVIEWDPLAGWIARGFHTNRWVRQEASEWLA
SYPDAAARGLVPIALGEPGAAHEAAQAALRWLHGAGHADAVRNQAAAYGPEAAHAVSQLL
AIAPEDLLPDSLPVLPKTLPLAALPRLILQQGGQALPQAVVPDVLMAMMLGKPDMPYPGL
AGLLEAVTPDSLARFGRALLAWWIGNGRPAKERWMFALQGRLGDGETARQLYGLLRQWRA
ALDRVRAYDAMAMLGEIGSDAALMHLAELSRQTRHDDLRTRADRMLGEVAEQRGLSLDQL
TDRTVPDLGLDTRARLTLDFGPRSFEIRMDDSFEPVVHNRTGKMLKTLPKPGANDDAGKA
AAATNQLKDLRKLAKSVATAQQRRLEAAMCARRRWAPTEFLPFFANHPVLRVFSRRLVWG
LFDTSNRLAGTFRIGAEGELTDLQGAPVQLVEDARIGIPHPLEMAALDPSLAAAWADVLA
GHGIVQAFEQLARQTFARDDSLRARRDIPHWAGRQVSNAALMGLEQRGWLREVGEGGMVD
SFGKRLPGGRRVRLRLGAGWFVQDSPDGAELQTVQSVALDGADGSTLGDLSPVDFSEIER
DLQRAVRPAAESAG