Protein Info for GFF3250 in Sphingobium sp. HT1-2

Annotation: RND efflux system, inner membrane transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1054 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 333 to 354 (22 residues), see Phobius details amino acids 361 to 378 (18 residues), see Phobius details amino acids 388 to 411 (24 residues), see Phobius details amino acids 432 to 454 (23 residues), see Phobius details amino acids 460 to 482 (23 residues), see Phobius details amino acids 543 to 563 (21 residues), see Phobius details amino acids 865 to 885 (21 residues), see Phobius details amino acids 892 to 912 (21 residues), see Phobius details amino acids 918 to 943 (26 residues), see Phobius details amino acids 964 to 985 (22 residues), see Phobius details amino acids 997 to 1024 (28 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1020 (1014 residues), 690.9 bits, see alignment E=1.4e-211

Best Hits

KEGG orthology group: None (inferred from 85% identity to sjp:SJA_C1-02870)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1054 amino acids)

>GFF3250 RND efflux system, inner membrane transporter (Sphingobium sp. HT1-2)
MSFRNISAWAIRNPVPPLVLFAALMLAGVVSFLRMDINQNPDISFPMVSVTVSQPGAAPT
ELETQVTQRVEAAVRGISGVEDITSFASEGQSLTNVQFKIGTPVDRAVNDVKNAVDQIRS
DLPDGILEPQVQRIDVDGGPIAYFSAEATDMTLEELSWYVDNTVAKRLLSVSGMAAVRRG
GGVSREIRVILDPARLQAYGVTAAQVNAQLSQVNINAAGGRTEIAGAEQSIRVLGNARNA
HDLGQTQIAISGGRTVKLADIADVRDMYAEQRSLALMNGRQVTSFSLEKAKGSSDVTVYD
DAMKVLDKLKKENPKVQFKQLYSSVEYTRGQYHSAMSAMIEGAVLAVVIVFLFLRDWRAT
MISALAIPLSAIPSFWFMDMLGFTLNGISLLALSLVAGVLVDDAIVEIENIVRHMRMGKS
AYQASIDAADEIGLAVLATTMAIVAVFLPVALMPGISGQFFIQFGMTVVVSVLMSLAVAR
LITPMIAAYFLKAHGEASHGEGWLMDRYMSVLHWSLDQRKAKARRARGGFRNRFVAFFVD
HRVWTLGIGMLAFVATLFAFGTLPMTFQPTINTDFSQVKIETVPGSTLEQTTAITRKVAD
MLAADTDVVEAAFADIEPTSADIFLTLKKTRPMSSVDWERKIAPKFQTIADARVNFQSQS
GGGFGRDIIMMYGSDDPELLEKTANQLVHEMAGIRELRAPRVQGDMQRPEIIIKPRLDLA
ASMGVTTAALSQSIRIATIGDIDQNVAKFSLSDRQIPIRVALAEDSRKDIATIENMPVPT
VSGGSVPLKVVADISFGAGPTQIRRYNQIRRVVVGADLAPGIVTSQANQKINELPTMKAI
KEGRIQGVQKIEAGDSKFQAEMLTNFVIAVFSGIMLVLAVLVLLYKRIMPPFVNLGSLLL
APLGGAIALHIAGQPMSLPVFIGLLMLLGIVAKNSILVIDFALEEMEKGVPKQEAILDAG
HKRAQPIVMTTVAMVAGMVPTALSLSGDAAWRAPMGITVIGGLLLSTVLTLVIVPAVFSL
ALGVEQWAGPRLSRRFLTHKSHDGHSGSHAQPAE