Protein Info for GFF325 in Variovorax sp. SCN45

Annotation: Nucleoside ABC transporter, substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF02608: Bmp" amino acids 50 to 272 (223 residues), 140 bits, see alignment E=4.2e-45

Best Hits

KEGG orthology group: None (inferred from 96% identity to vpe:Varpa_3248)

Predicted SEED Role

"Nucleoside ABC transporter, periplasmic nucleoside-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (334 amino acids)

>GFF325 Nucleoside ABC transporter, substrate-binding protein (Variovorax sp. SCN45)
VAARRQLIIRSVAIAAALAAGAPGLALAQQAKLKVAAVYTVPFEQQWVGRIHKALKAAEA
RGEIEYKATENVSNADYERVMREYATGGNQLILGEVFGVEAAARKVAKDFPKVAFLMGSS
LKPQAPNFSVFDNYIQEPAYLSGMVAGGVTKTNRIGMVGGFPIPEVNRLMNAFMAGAKET
NPKVEFSVSFINSWFDPPKAKEAAFAMIDKGADVMYAERFGVSDAAKEKGKLAIGNVIDT
QSQYPDTVVASALWNFEPAADHAIKLVKEGKFAAEDYGVYAQMKHKGSELAPLGTFEKKV
PADIIAKVKAKQADILAGKFTVKVDDGQPKSTAK