Protein Info for GFF3235 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: FIG00576391: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF09436: DUF2016" amino acids 9 to 78 (70 residues), 56.7 bits, see alignment E=1.8e-19 TIGR03735: PRTRC system protein A" amino acids 9 to 195 (187 residues), 192 bits, see alignment E=4.1e-61 PF14464: Prok-JAB" amino acids 86 to 172 (87 residues), 45.7 bits, see alignment E=5.5e-16

Best Hits

KEGG orthology group: None (inferred from 86% identity to del:DelCs14_1823)

Predicted SEED Role

"FIG00576391: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>GFF3235 FIG00576391: hypothetical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MMDMLDPRDQALLAACPVVAAPRFGKLPDMANGQRIIVARNGWFVQTRLDWLDSISALGL
DAPAMRLPYGEVQERLRFSFGPLPIKLIEEFVAYGREHLPNEVAGVLIYSRSTGRLRLDF
CDAEWSSPVRIDYRRPPMARDETVAVDLHTHGRGPAFWSADDDRDDQGIAVAGVFGLLDQ
PAPMACFRLVINGLYKSLPRHPWQGPPALPFTPESGDPGYAGDGWMRRVMRRWHRA