Protein Info for GFF3226 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 644 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details PF00672: HAMP" amino acids 311 to 363 (53 residues), 46.7 bits, see alignment 3.3e-16 PF00015: MCPsignal" amino acids 414 to 608 (195 residues), 116.4 bits, see alignment E=1.3e-37

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfo:Pfl01_0529)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (644 amino acids)

>GFF3226 hypothetical protein (Pseudomonas sp. DMC3)
VSAVLSLLQSRLLRPVFVTLGIALLVQVLVAVALTRSTVTALEADLAVRLGADSQKLSGE
LEQAGREVTSSLDALSASTRQRLTAGLSARLKEEQAQLRATLEKDLKDSANDMAQLLASV
APRAMWDSDVPTLSEFARRAQRNPNVLFVVYDDATGQHLTRYLNRENPINKALLEKGQGE
RALDKVLDAAKNDPSVYYLEASINPNGVEIGKVLMGVSTASVETDLAELDKRFLALIASS
DQLVGDSLKGAAADSAKAMQARLQSAQGTAGEMKANTAQTVQDAAATLRWRIGLGLALVG
CGVLLLLAVVLGHRVVNRLKMLNAAMDDLAAGEGDLTKRVQINSKDEIGDMASAVNRFVD
KLQPIVREAGDVAQRTGVEIGAMTLRNAGADAAAGMQRDEVAESLRALSQMADEAQSESQ
AMQAALKQVVDIRQATDENTRTSAKVGSLIEALAGQVDTGAKVIERLAQQSEQIEVVLTV
IHGIAEQTNLLALNAAIEAARAGETGRGFAVVADEVRALASKTQSSTGDIQAHIVALQQG
AREAVEAIGQAGRQASEGLLVLRDSARLQQSVQASVEQVHAAIGLATQAAAHQAQGAQAV
RGRVETIHAQAEKAAQAVVETTASGKVLDGLAAQLKASLGQFRA