Protein Info for GFF319 in Variovorax sp. SCN45

Annotation: EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 90 to 113 (24 residues), see Phobius details amino acids 125 to 149 (25 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details PF06532: NrsF" amino acids 10 to 213 (204 residues), 235.7 bits, see alignment E=2.3e-74

Best Hits

Swiss-Prot: 44% identical to NRSF_AZOOP: Probable anti-sigma-F factor NrsF (nrsf) from Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS)

KEGG orthology group: None (inferred from 82% identity to vpe:Varpa_3241)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>GFF319 EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR (Variovorax sp. SCN45)
MKTDDLVAMLSTGNVAVPRRSASGRIGLAVLAGLPVSLFILFAEYGMRRDIVQAMFWPMF
WVKVVFPLCIAAAGFVAVQRLARPGVPARHAWTGAALPVIGIWALAVIAWFVVPPEERMP
SLMGQSWRVCAVSIGLMALPVFAATMVALRGLAPTRPALAGAAAGALAGGLGAAVYALHC
MELTAPFLAVWYVSGIAVPVLVGAVLGPRLLRW