Protein Info for GFF3184 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: putative flavocytochrome

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 159 to 177 (19 residues), see Phobius details amino acids 189 to 207 (19 residues), see Phobius details PF01794: Ferric_reduct" amino acids 44 to 170 (127 residues), 60.6 bits, see alignment E=2.5e-20 PF08022: FAD_binding_8" amino acids 240 to 296 (57 residues), 29.3 bits, see alignment 1.1e-10 PF00970: FAD_binding_6" amino acids 244 to 310 (67 residues), 27.5 bits, see alignment E=5e-10

Best Hits

KEGG orthology group: None (inferred from 49% identity to tau:Tola_1320)

Predicted SEED Role

"putative flavocytochrome"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>GFF3184 putative flavocytochrome (Hydrogenophaga sp. GW460-11-11-14-LB1)
LRRIHLFFAGVFVITLILGITAEAPRWLDAPGTRRAGDAFMQGTGVLAIVLMSLSLILAA
RPRIVEPWMGGLDKMYRLHKWLGIANLIVAAIHWQAYGFVGGGEAEAPSAMPARNWEGLL
PAQHDLAVFIGDQAWKFVLVLSVLALVKRFPYRLFFKTHWLFVPTYLVLVFHTVVLLDSR
YWATPLGPVLAVLVVAGAAAGIICLLRSFQVADDRTMGEIVGLTYHEAVRTLLVEMQLDG
RWKGHQAGQFAFLTMDSDREPHPFTITSAWTGDGRISFLIKELGDYTNGLASRLKVGDAV
KVEGPWGRFDFSGDAPRQVWIGGGVGVTPFIARMQQLGHSPDGRPVDFFLSVPTPYPFGD
DFLRHHAQAAGVNLHLHYSDSDGFLSVEHLRQKIPRLAEADIWFCGPAALGSSLKKGLQP
LGVSNARFHQELFEMR