Protein Info for GFF3171 in Pseudomonas sp. DMC3

Annotation: D-inositol-3-phosphate glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF20706: GT4-conflict" amino acids 143 to 337 (195 residues), 41 bits, see alignment E=1.9e-14 PF00534: Glycos_transf_1" amino acids 192 to 334 (143 residues), 104.9 bits, see alignment E=5.4e-34 PF13692: Glyco_trans_1_4" amino acids 196 to 330 (135 residues), 105.6 bits, see alignment E=4e-34

Best Hits

KEGG orthology group: None (inferred from 56% identity to ppf:Pput_4810)

Predicted SEED Role

"Glycosyl transferase in large core OS assembly cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (364 amino acids)

>GFF3171 D-inositol-3-phosphate glycosyltransferase (Pseudomonas sp. DMC3)
MNILNIMWAGGAPFASIHKVHQQILSQAAPSAVVKTWLLQGQGAECGVDVGEVREWRLSS
ARLKGRHFWRLAKPVMRARFRQALVDSDARLLLLDGMGVARTLLPVLKKLPHIRAVVIFH
GSARLNAGDQALFQAIPASRLTLVAVSSTLADSLARDLQMPVTALRSAFDPEAFRADLFT
REQARTRLGLPQGDTPVLGAVGRLVSEKGFGYLLDAFAAALDTRPDLRLVIVGEGSKRAA
LEQRIDALGLQEKVLLTGHLNEAAQLYRAFDWVAIPSLEEGLGLVMQEAVMAGVPVLCSD
LEVFSEQLGSAGWYAPVNDTKAWAEAIDRAFSASSQAINAEQYRMLAPDEAWSSFSQAAR
ALFS