Protein Info for GFF3170 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 transmembrane" amino acids 13 to 33 (21 residues), see Phobius details amino acids 40 to 61 (22 residues), see Phobius details amino acids 81 to 103 (23 residues), see Phobius details amino acids 110 to 127 (18 residues), see Phobius details amino acids 142 to 164 (23 residues), see Phobius details amino acids 175 to 198 (24 residues), see Phobius details amino acids 213 to 232 (20 residues), see Phobius details amino acids 244 to 264 (21 residues), see Phobius details PF01925: TauE" amino acids 20 to 252 (233 residues), 91.9 bits, see alignment E=2.6e-30

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 94% identity to vpe:Varpa_4411)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (265 amino acids)

>GFF3170 hypothetical protein (Variovorax sp. SCN45)
MTAAELLVPPLAPATLAYSLCVVFAAGIVRGFAGFGFSAITVAGMSLVVSPALVVPAIFM
LEILASLSQLRGIARDVDMPWLSWLMLGNLICIPIGVALLAWLPETPLRLLIGALLMSAA
LLLRAGARLTLVPTRGVRLSAGLASGFINGVAAIGGIAIAVLLSTVKMAPATLRATLIAL
LLFSDVVSLICAALMPSSVHASGSLLGPDTLKWALWLAPAMLAGIWWGQRSFKGVSPEQF
RKHVLNLLIALATVSVVRSVAGLVG