Protein Info for GFF3157 in Variovorax sp. SCN45

Annotation: Sulfite dehydrogenase (quinone), membrane-anchor subunit SoeC (EC 1.8.5.6)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF04976: DmsC
  • amino acids 3 to 204 (202 residues), 59.7 bits, E=1.6e-20

Best Hits

KEGG orthology group: K07308, anaerobic dimethyl sulfoxide reductase subunit C (DMSO reductase anchor subunit) (inferred from 88% identity to vpe:Varpa_4398)

Predicted SEED Role

"Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3)" (EC 1.8.5.3)

MetaCyc Pathways

• formate to dimethyl sulfoxide electron transfer (2/2 steps found)
• NADH to dimethyl sulfoxide electron transfer (1/2 steps found)
• hydrogen to dimethyl sulfoxide electron transfer (1/2 steps found)

Isozymes

Compare fitness of predicted isozymes for: 1.8.5.3

Use Curated BLAST to search for 1.8.5.3

Protein Sequence (310 amino acids)

>GFF3157 Sulfite dehydrogenase (quinone), membrane-anchor subunit SoeC (EC 1.8.5.6) (Variovorax sp. SCN45)
MHPAFSILFFTTLAGAAQGLVFALALAVLFGLDLAPGFLGIALGVAEVLLVAGLAASFMH
LGRKTRAWRAVLMWRTSWMSREVIVLPVFIALVALWWLSLRLGIGAPWSWLLPLLVLYGA
MLLWYCTAMIYACLRFIEEWAHPLTIVNFTLIGLSSGLVLACAMAAASGEARFVQVFGPW
ALVATLAAWAARGGALRRNARLRHKSTLQSATGIRTQKLVQKSMGMSAGSFNTREFFHGV
SLAALGNMKIGFLLLAFALPALMVLWGIFSASAWPWLLAVLVQAPGLLAERWFFFAQARH
PQNLYYQVVS