Protein Info for PS417_16115 in Pseudomonas simiae WCS417

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 920 PF00486: Trans_reg_C" amino acids 27 to 102 (76 residues), 60.3 bits, see alignment E=2.4e-20 PF00931: NB-ARC" amino acids 138 to 381 (244 residues), 24.4 bits, see alignment E=2.5e-09 PF13401: AAA_22" amino acids 149 to 254 (106 residues), 37.3 bits, see alignment E=4.8e-13

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfs:PFLU3708)

Predicted SEED Role

"Disease resistance protein / Tetratricopeptide repeat-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TYF4 at UniProt or InterPro

Protein Sequence (920 amino acids)

>PS417_16115 transcriptional regulator (Pseudomonas simiae WCS417)
MSDLSDQAVHFGPYRIHPRQRLVLEAGRPLRLGRRAVEILLILLEQAGNVVSKQELIARV
WPKSVVEDGNLRVHMAALRKALGDGQAGQRYIVTVAQRGYSFVAPLSIEPMTLPTEGAPQ
GTCHNLPLRRTRMLGRQALIDSLVQQLPEQRFITLTGAGGIGKTTVALRVAELLIGHYRD
GIRFLDLAPLSAPSMILPNLAALLDLTHTEHERLVAFARSLQERQVLLVIDNCEHLLDDI
ALISETLLRHAPRLHILATSREALRAEGEYVQRLEPLACPPAAGNRAQALGYPALQLLIE
RAMSHQDSFELSDAELPLAIDICQRLDGIPLAIELVAAQIERFGLPGLLVQMEDNFRLLT
RGRRSALPRHQTLRATLDWSFELLTACEQICLRRLAVFRGGFSLASAAAVIAGGQVAPTE
VLASITQLVAKSLLNVEAGDDEMVYRLLDITRTYALEKLSVAQELDATRDRHVERCLALM
EQAREDWESVATQAWIDRYAPLREDIRSALDWGLAQEGEHLLAIRLTVSAMPLWQELSLL
REHRLYVDKALALMDQAVSPCPRLTMQLQLALGSLSYHAMGGAPQTIAAFVSARRLADAS
EDVPGQLRAVSGHMAVNLCAGQYRQALAHSLQFDRLDPRTDPQLDISAQRLRVLAQHYNG
NQALARHNAEQVIQRMAHSGHLNRFAHGIGVQYDQSVASLTVLARILWLQGFPEQAWRTA
SQALGLAQQINHGTSICYTLALAGVVIARYNGDEDAAQTLQALLLEHAHKHSVQLFKTWA
GHYAGILGHKDLQGLGLIEDILVTLGSHAVDAPGFDRARAGDAGWCTPEILRVHAESMTD
ARAAEALLLEALGLAHQQGALAWELRCATSLAGVWLSQGRLEAARDLLGSIYARFTEGFA
TPDLVRVRRLLDELQDKRPA