Protein Info for GFF314 in Variovorax sp. SCN45

Annotation: Acyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 transmembrane" amino acids 42 to 74 (33 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 79% identity to vpe:Varpa_3236)

Predicted SEED Role

"Lysophospholipid acyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>GFF314 Acyltransferase (Variovorax sp. SCN45)
MKHTDVEARAVNEAAQAPRSAPKGEKSEKGDWAHTPERSNMLALRFICFMAVVFGRHVTR
LLLPPISLYFLLFLPAQRRHIKRYLFRAIGPHAGWIDGYRLLHAFASTVLDRVYFLRGRM
DLFKVSIDGNLPIDKELSQGRGAFLLGAHVGSFEALGACRQQTHQHNLRIAMLMYPDNAR
RITATLDAIAVPELRPHVIALGRPHSMLALRDWLDGGGLAGMLADRTLPGGEDQPAHQRG
NNIVLPFLGQPACFNDGPFRLAALLRRKVFFMAGLYGGGARYDVQFDALADFGEPVSGLA
QREERIRAALEAYVARLEALCRAHPYNWFNFHDFWLEDAA