Protein Info for GFF314 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1014 transmembrane" amino acids 60 to 76 (17 residues), see Phobius details PF13700: DUF4158" amino acids 58 to 191 (134 residues), 56.3 bits, see alignment E=3.7e-19 PF01526: DDE_Tnp_Tn3" amino acids 592 to 977 (386 residues), 319.7 bits, see alignment E=2.4e-99

Best Hits

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1014 amino acids)

>GFF314 Mobile element protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MASYRYKFLGKQQLPSKMTEAEAIEHCRLSDEQLAAIPIVSRVDDYGNAKRGRPPLDLRL
GYALQLMFLGLTGRLAGVTDSFPANMVKVLANQLGTDATAIATIKSIYRGKAGPQAEGSV
ERRLREQRTWARQTLGFEVFAPEIERELAATLTMRARDAASQAELVTFAEEWLYERRIVL
PGISTLEDRANAAFRAIETLAMQVINGAVKPARQRAILKIMFDQGPSEDSTVLEWLKTSA
GKHGVKNLEEVSSRVDYLKTLGVADWNLTSLSQTRIQAFAQRVAHRPPSETSRRVLETQI
VEVICFLKATLWELTDEAIFRMGRRTSDLVRMGAKRVQSKQASRSGIYRESVQSMLNLAQ
DADKTAEERIAEIVRVANEVLNMPRVSHADIVRETLVEQGERVATVLDTMDCLNIEGDES
KKDLTLVEQLKKIRTEGLKELPKDWDVSDIETAWRPLVDDEDRVKALKAFKACALLRIRK
GLLGGRLWVPHSANFRSRTDSLIPEEEWERDREKFCTAFGLEVDPQVAIARQMALLIDGL
QRVKEGVANGLLEIDEQACVRLPALNAMAEEPELKRTAQAVQEMIGPVQLPDLILEMDAQ
TRFSSKLLGRDAKTTRELIALYAALLAHGTEIDAKSAAAMVSGVTVAEVTAAMRLLETPG
RLRAANNAVVAYQQSIPIVKLWSDGTKASADMMAMDTTRHLGIARTDPRRKTPAAGIYTH
VLGSYPVFYDQPIVLLTRQGGPAVEGVEQYNSSSEERIKIQLLAVDTHGYTYGAMALAKH
LRFDLCPQLAGLPDCKLWVTRKTKVPEELDAIALTNVSERAIVRGWDVMLRLVASILTGR
ISVGWALARNGSAAIGDKLHRALDHYGRMLRSVYLCDYFTKEQFRREIHTLLNRGESVHQ
LQRAVYFGRIAAERGRRRDELRAISGSHVLLTNLIIAWNTKKLNEVVAKLRSAGGGVNDD
IVRRLGPVFFGNINFRGVMSFSIEKYAGVLLSTVAEETPAEARRRKLRRLPQMS