Protein Info for GFF3133 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: IncF plasmid conjugative transfer protein TraG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 923 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 343 to 362 (20 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details amino acids 398 to 398 (1 residues), see Phobius details amino acids 428 to 450 (23 residues), see Phobius details amino acids 459 to 477 (19 residues), see Phobius details PF07916: TraG_N" amino acids 3 to 466 (464 residues), 269.7 bits, see alignment E=2.7e-84

Best Hits

KEGG orthology group: K12056, conjugal transfer mating pair stabilization protein TraG (inferred from 89% identity to del:DelCs14_1680)

Predicted SEED Role

"IncF plasmid conjugative transfer protein TraG" in subsystem Type 4 secretion and conjugative transfer

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (923 amino acids)

>GFF3133 IncF plasmid conjugative transfer protein TraG (Hydrogenophaga sp. GW460-11-11-14-LB1)
MWEIYAYQNADSLFGVFNAAAAIHASSDYASAVAAVAFCGFVAALIAYAFAPEKLQGWKW
LASVVLVFGVLIVPRVTVGIVDRTGGSAVRVVDNVPFGVAVLGSLTSTIGHTLTGLFETA
FQVIPGMGALPAELSYEQNGLMFGNRLVRETGNVVFQDPAFRTDLVNFIHNCTTYDLIDG
TLDPATFSTSDDVWPLMASPNPARFSTLTGTGGAVGVDTCPNVYLSLNGRLPAQLQRIQG
RLAFQLNPTLPGTAAAAAIAGQIQQAYLKNSIANASATAADIIRQNAMLNALEDTGKIVG
QKVNDPAAMVLAVGRAQAVAQMNASWLNFGKVAEQALPVFRNVIEAVTYALFPLFVLLLL
LTSGRETMMAFKGYAAILIWIQLWPPLYAILNYMASIYAAYDLAAAADLGTGAKALALQT
SSIIYSRALSGEAVVGYLAISIPFIAWAALKRMENFGTALVGGLSGLQAVLSGSTAASTV
GNTSLGNVSMDQMQLAPNRTSAFMSNWQHDLSGNTFSSNALTGTTAVNLLRNQGFASRVV
SMRVSEQDVQDASRQVDAARGEGVAASSERLSVLAEAFTKGVAKLRSSRSSTGSTSSSFE
QYGETLNRLDQISKSVADSTGLSQSQVARIALGASGHVGIKTPMAGLSGNATADKSYASS
LSAEERRVVGSMTSDQLAEFKQFGDRASQDRSFVSVIASDAREAQDLAARLSSTAARSER
ADASIAERSAFAERVSTAYERGETISIDIAQDPHNLAMFTRYAEQYGGNSASAHVLMEAE
LARQSLRPHKVFSDGTAVPAAFGDLRAQHLRNSSDPALEPDLADRHHSNQGDVRRFGGTA
QPAPTAGAPSSMRSTIREEGERIRATTSADKGAFDRKAQITKTTDGTLASERSLMKQSVN
QVKEDAAPLIDDAKKAVKDVLKK