Protein Info for GFF3131 in Variovorax sp. SCN45

Annotation: VgrG protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1057 TIGR03361: type VI secretion system Vgr family protein" amino acids 12 to 509 (498 residues), 584.6 bits, see alignment E=1.7e-179 TIGR01646: Rhs element Vgr protein" amino acids 18 to 512 (495 residues), 478.6 bits, see alignment E=2.5e-147 PF05954: Phage_GPD" amino acids 23 to 331 (309 residues), 314.2 bits, see alignment E=1.9e-97 PF04717: Phage_base_V" amino acids 393 to 462 (70 residues), 54.3 bits, see alignment 2.8e-18 PF13296: T6SS_Vgr" amino acids 489 to 588 (100 residues), 78.2 bits, see alignment E=1e-25 PF10106: DUF2345" amino acids 661 to 780 (120 residues), 37.1 bits, see alignment E=5.5e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1057 amino acids)

>GFF3131 VgrG protein (Variovorax sp. SCN45)
MTRSFIAHSALGERLKFRSMTGQERISALFEHRVRLISDMPNIQPRRMLGEDMSIEVNLA
TELGGAGKRFLSGQVTRFAYVGKDDGDMCVYEATLRPWLWYATRRSDFKIFQFKTAPQIL
QEVLAPYGFAIDARLSGNYRTWDYCVQYSESDFNFVSRLMEQEGIYYFFSHAQGSHQLVL
CDGADSHTPVPSGPVKVPYHAGVLAAQILEQDFIDSWSHSEDIASGNFAADDYDFRKPNA
EIDTVRQQPAGHSRDDFEIYDWPGGYTELGDGENYARLRLEQLAGRRELVSAEGNLRHMA
PGYLFELARHPNAEDNRRYLIEAVTYDFQENALRVAGAADAAYSESTSSTSYRQTFEVLP
DSAPFRPARVTPRPRTTGPQTAVVVGPAGEEIHTDEYGRIKVQFHWDRYGRRDENSSCWI
RVSQTWAGSNYGAMHIPRIGQEVIVDFLNGDPDYPIVTGCVYNAAQMPPWELPRHKTQTG
FQTNWSKGGGGKHMLRFEDSRGTEHIELSTDHGNTHLHMGYLMNQGSGVQRSYGFELRTN
EWGSIRADKGLLLTTYTQDYAQRTSRDNPDGHEHMGATLAQSNALMQASGQAIAATKALV
GAMAQGKNQTLMGLVQGVQAAGGVSQAVAALAAGGAPEAGVSDNPDPAMADAQQMLDLSR
KIDKPVVSIVSPEGQTMISPKPIVLSSGQSVSVRATSAMTLTTGAQLTQLVTGGMLTQVS
EGGQVNVVSGGDIVSHASAGAVNLVSKTDASMTSTDSNANITGRKSVVIQAADQDVFVTG
KTSISLICGKSSIVLLADGTVNINGVKGLVNFTGELDQRGSKIFLNCDAPIGSAPEEAVV
EDGVPVAPAAAATSAEASEHAVPAAAPPGYVTTGLGKGVDAIAARSPTLQRQVKFLQGQG
WKIGYGAAGGGTYADTNPAVKKIVIDSNNASDPYKTAASLSHEVGHAVYSYRFKPDMSSK
TAFVNSMLSSEGEAALNQIQVQREVWRAAKVDILKGANPANVEAFNEAYNGMVKGGTREA
ARAAAGKYYGTLNTSTTGEQYTQYYGNSYDKKYAGKH