Protein Info for GFF313 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative carbohydrate kinase in cluster with fructose-bisphosphate aldolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 494 PF00370: FGGY_N" amino acids 7 to 245 (239 residues), 151.7 bits, see alignment E=2.9e-48 PF02782: FGGY_C" amino acids 256 to 446 (191 residues), 120 bits, see alignment E=1.2e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to seh:SeHA_C4112)

Predicted SEED Role

"Putative carbohydrate kinase in cluster with fructose-bisphosphate aldolase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (494 amino acids)

>GFF313 Putative carbohydrate kinase in cluster with fructose-bisphosphate aldolase (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MPDYHAALVIDIGTTNCKVSCYSCHDVSVLEVRKFPTPTISSDKGEVDFDIEALWQALRL
VMAELVASVPFPVKNISIASFGESGVFVDKEGVILTPMLAWYDRRGESYLSSLSKAEAEE
LYSITGLPPHSNYSAFKMRWLLDNYSLHERKDICWLHAPEVLLWRMTGAKKTEISLASRT
LCLDIARRTWSRNAAGILGIPFGVLAPLIKPGEVAGWMTATLREELGFSHEVKVTLAGHD
HMVGARALQMQPGDVLNSTGTTEGILLLNTQPTLDVQARRNKLANGCYSDGEFFTLFASL
PVGGYALEWVKKTFRLTDKEISTGLEKVMEQYLKPSWSVEHVPVFIPHLRGSGSPNKNRH
TRGLLFGLTDSLPPESLLESVFIGLAMEFAHCHGCFNIPAGRTVKVIGPAVKNPYWLQLK
ADILQCPIEAIAFDETVSLGALLIACPNVVPPTVPVAERYFPDAVRSAKLKIYQQQWLSF
YQFKLRQEGALIGE