Protein Info for GFF3128 in Variovorax sp. SCN45

Annotation: T6SS PAAR-repeat protein / RhaS protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1485 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details amino acids 53 to 74 (22 residues), see Phobius details amino acids 187 to 205 (19 residues), see Phobius details amino acids 217 to 236 (20 residues), see Phobius details PF05488: PAAR_motif" amino acids 91 to 162 (72 residues), 29.3 bits, see alignment 1.6e-10 PF20148: DUF6531" amino acids 241 to 318 (78 residues), 68.4 bits, see alignment 1.1e-22 PF05593: RHS_repeat" amino acids 440 to 468 (29 residues), 23 bits, see alignment (E = 1.6e-08) amino acids 561 to 593 (33 residues), 23.7 bits, see alignment (E = 1e-08) amino acids 619 to 656 (38 residues), 36.8 bits, see alignment (E = 7.9e-13) amino acids 688 to 717 (30 residues), 25.7 bits, see alignment (E = 2.4e-09) TIGR01643: YD repeat (two copies)" amino acids 535 to 576 (42 residues), 19.4 bits, see alignment (E = 1.1e-07) amino acids 556 to 596 (41 residues), 29.8 bits, see alignment (E = 5.8e-11) amino acids 602 to 639 (38 residues), 28.3 bits, see alignment (E = 1.8e-10) amino acids 619 to 656 (38 residues), 30.4 bits, see alignment (E = 3.9e-11) amino acids 666 to 702 (37 residues), 27.7 bits, see alignment (E = 2.7e-10) amino acids 703 to 744 (42 residues), 24.8 bits, see alignment (E = 2.2e-09) amino acids 851 to 878 (28 residues), 17.6 bits, see alignment (E = 4.4e-07) amino acids 1134 to 1169 (36 residues), 22.2 bits, see alignment (E = 1.5e-08) amino acids 1175 to 1201 (27 residues), 16 bits, see alignment (E = 1.4e-06) PF03527: RHS" amino acids 1249 to 1286 (38 residues), 45.5 bits, see alignment (E = 1.1e-15) TIGR03696: RHS repeat-associated core domain" amino acids 1296 to 1369 (74 residues), 82.7 bits, see alignment 2.1e-27

Best Hits

Predicted SEED Role

"Rhs-family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1485 amino acids)

>GFF3128 T6SS PAAR-repeat protein / RhaS protein (Variovorax sp. SCN45)
MDGKPAARLHDPIAHTNAHARFWAKFAGGLIGGIAVGFAVGVAAAAVVGTGGLAGPLVAG
AVVVGARMAGGYLGASLGESIADALVPETLTVTGMITSGSSDVFIDSKAIGAARASPEMP
MDTVSCKKDSPQILLAEGAETVFVNMGVASRKDDHTECGAKVSEGSPTVFIGGPTARVRE
VADEVPLISKVLVTIFNLVMIYRGLRCLPKLARQGKNALPCLIEGAVGLGMGIHGLVSSF
GNPVHAATGGKFLGGESELDFTLPGPLPIAWQRFYSSHDLRRDGALGQGWSLPYAMELRL
GSDEESQPIVTLIDEQRRPMVLPGIEPGTRQYSLRDGLDLCRTEGGHYFIHVPGGLFFMF
APPAEGEAHAQTLKLARIEDRNGNFIDLRHDALGRLAELTDSTGRLLALDYAGESRQLRA
VRLAAGAPGELPGVLVAYRHDSEGRLLDVTDRNGAVARRFGYDAQGLMNFHADAAGLECR
YEWQGTAGDAHVARHWTNDGESYTVRRMPPAADDALALGQTLVVDQLGREFAWHWNADLQ
VTDYADAAGRQWHAEYNELRQLVAITEPGGATTRCTYDPMGFMSSRTDALGRTQSTGWTE
FGEPWRETLADGSTWTYAYSDQGNLVRETDPLGRTTEYAYDRRGLPIVVTDGKGGTNRMA
WNECAQLVSLTDCSGKTTRYTYDGWCHLQTVTDAAGQRTRLTHDAMGRLLSVSLPDQSHQ
SFRRDAAGRIVAATDALSRSTQFAFGLRGQPLTRQDAEGRRIAWHYDSAQRLQSLVNENG
LHFEFIRDTADRVVEERRVGGTRVQVEYDANGWPVCITHVPGIGDEDLALHDGTGPRPAA
SRPLRTELLRDAVGRLVAKRTGSHHYRYTYDLLDRLTEAVKLEAPRPGTRDEPRALHRTV
FAYDKLGRLIEETAIDETTGETHTLRHAHDELGNRTQTVLPAIASQPGVQRALNYLYYGS
GHLHQVNLSHQHGNAPEVHQLISDIERDDLHREVARSQGALHTRFVLDPLGRRAASWCRA
GGLDTAFTTQDPSWRQAIDSAGTPGARLLDGLMKEYSYDPVGELRQSRHSLQGTTAHRFD
ATGRIEQTVRGAAAANSERFAYDPAGNLLDASSTAPGHVRDNLVRVFEDKRYSYDGHGRL
VRKRAGRHTDQRFEWDEESRLVAVHTTRRPGTPEATTQLTRFDYDAMGRRVAKHDAFGST
RFIWEGMRLIEERRGSQVVSYVYEPGGHVLMARLDAKAEPAEASATAQVFHFHNDTAGLP
EELSNTEGQLCWRASYRTWGATVTEQWEVTALNGRAVASTDTVPQAIEQNLRFQGQYLDR
DTGLHYNTFRFYDPDIGRFIGPDPIGLMGGSNLHQYAPNPSRWIDPLGLSYCAFGNASKP
RAPRPGKDIAVDADGMVKSQAGKQFPEGASTTVDPTKSPLSGHYHEIPEGTKMPSGIDIV
RDGSDVIPNSPRGPGHATVFPTRDMPFTEFQALFESLPWQHAGKK