Protein Info for PS417_16005 in Pseudomonas simiae WCS417

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 152 to 176 (25 residues), see Phobius details PF00672: HAMP" amino acids 174 to 223 (50 residues), 30.7 bits, see alignment 3.2e-11 PF02518: HATPase_c" amino acids 328 to 432 (105 residues), 82.3 bits, see alignment E=3.5e-27

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfs:PFLU3654)

Predicted SEED Role

"sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UMC0 at UniProt or InterPro

Protein Sequence (434 amino acids)

>PS417_16005 ATPase (Pseudomonas simiae WCS417)
MTFRLGWPRTLASQLSLIFLISLVCAHGLSFSAQFYERYISARTAMLGNLENDVSTSVAI
LDRLPVNERASWLPRLDRQNYRYLLNAGETGEPMSSDDVPMAATSIADALGEHYALTFRD
IPGIQKHFQAHLNLADGSPITIDVRPAALPVAYWLPVVLVLQLALLLGCTWIAVRLAIRP
LTRLARAVETLDPNAHPTPLDEQGPTEVAHAAAAFNEMQKRIAEYLKERMQILAAISHDL
QTPITRMKLRAEFMEDSAERDKLWSDLGEMEHLVREGVAYARSVHGATETSHRINLDAFL
DSLVFDYQDMHKQVSLTGKSAVVFDTRPHALRRVLVNLVDNALKFAGSAELEVGSTADGE
LSIKVLDRGPGIAEDELVQVMQPFYRVESSRNRGTGGTGLGLAIAQQLAVAIGGSLTLSN
RPQGGLCAEIRLGL