Protein Info for GFF3081 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Unknown, probable amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 90 to 117 (28 residues), see Phobius details amino acids 136 to 156 (21 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 205 to 226 (22 residues), see Phobius details amino acids 238 to 257 (20 residues), see Phobius details amino acids 296 to 322 (27 residues), see Phobius details amino acids 343 to 362 (20 residues), see Phobius details amino acids 369 to 394 (26 residues), see Phobius details amino acids 408 to 429 (22 residues), see Phobius details amino acids 438 to 459 (22 residues), see Phobius details PF13520: AA_permease_2" amino acids 15 to 442 (428 residues), 114.2 bits, see alignment E=7.8e-37 PF00324: AA_permease" amino acids 36 to 398 (363 residues), 68.6 bits, see alignment E=4.5e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to sec:SC3066)

Predicted SEED Role

"Unknown, probable amino acid transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>GFF3081 Unknown, probable amino acid transporter (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MFKNRLASHLERGVIGFPTTLASSVGLIMASPVILTVTSGFGSGGDTFALAVLLAFIMMQ
AQITTFAEAATLIPTTGSVYDYISCGMGRFFAITGALCAYLIVHIFAGTAETILAGVMAL
VNFESVSEHVAMQHNTWMVGVGMVVVFGLLNAIGVEVFGKVEVFLTFGMWTTLTIFGLCG
ILLSPVTHHSGWFGAPLDVSNLSGLFGYIGMAMFMFVGCELVTPMAPEIKKAHRTIPRAM
ALGLLAVAGCMFLYGAAINRQVNNVVVDAANHIFLLDTPMAIPAFANRVMGHVGQYWLGV
GLLLAGCATINTLMAAVPRIIYGMALDGALPRFLTWLHPRFKTPVIAIAFGVAIPCLHAW
YLNGDIDHIVPLILAAVCAWGVAYLLVTLSVVILRIRRPDLPRAYRAPWFPLPQIISSVG
IIIAIINIAPPGMNSRDVLIPFGIMLGLTAAYALFWTLCVQRVNPFLPLPVEEVVERAMG
NYEKRNNEEMTPDVLRPLV