Protein Info for GFF3078 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative arylsulfatase regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 TIGR03942: anaerobic sulfatase maturase" amino acids 25 to 374 (350 residues), 428.3 bits, see alignment E=2.5e-132 PF04055: Radical_SAM" amino acids 31 to 186 (156 residues), 55.8 bits, see alignment E=3.4e-19 TIGR04085: radical SAM additional 4Fe4S-binding SPASM domain" amino acids 276 to 350 (75 residues), 51.7 bits, see alignment E=9.5e-18

Best Hits

Swiss-Prot: 74% identical to ANSME_KLEAE: Anaerobic sulfatase-maturating enzyme (atsB) from Klebsiella aerogenes

KEGG orthology group: K06871, (no description) (inferred from 100% identity to set:SEN2966)

Predicted SEED Role

"Putative arylsulfatase regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (394 amino acids)

>GFF3078 Putative arylsulfatase regulator (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MLNLNTLRQQQIPVMTEYRAQIPFHILAKPIGPACNLACRYCYYPQGETPVEKMNESTLE
IFICRYIAAQPASAREINFVWQGGEPLLAGIGFYKKVIALQQRYAPDGVTISNSLQTNAT
LLNDAWCRLFRDNNFTIGISLEGSEDLQNHHRPGKRGEASYPAVLRGITLLQHYRVDFNV
LIVVHDDMARHAAAIYDHVVSLGVRYLQFQPLMNEGNALQQRYQLSADNWGRFMIDIWRQ
WRKRGDMGRVFVINIEQAWAQYFTHISATCVHSARCGTNLVMEPDGKLYACDHLINSQHY
LGQLANNTLAPAVDSATRLPFGIKKSQRRECQRCSVKIVCQGGCPAHINSAGYNRLCSGY
YSFFTEILAPLRAWPRDLNGLKAWRADVMGRFSG