Protein Info for PS417_15620 in Pseudomonas simiae WCS417

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF00561: Abhydrolase_1" amino acids 88 to 198 (111 residues), 38.4 bits, see alignment E=4e-13 PF12146: Hydrolase_4" amino acids 89 to 218 (130 residues), 56.6 bits, see alignment E=8.5e-19 PF12697: Abhydrolase_6" amino acids 90 to 200 (111 residues), 41.8 bits, see alignment E=7.3e-14 PF00326: Peptidase_S9" amino acids 108 to 270 (163 residues), 23.4 bits, see alignment E=1.3e-08

Best Hits

KEGG orthology group: K06889, (no description) (inferred from 94% identity to pfs:PFLU3610)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UAR4 at UniProt or InterPro

Protein Sequence (308 amino acids)

>PS417_15620 alpha/beta hydrolase (Pseudomonas simiae WCS417)
MSSRFLSRLSLRWFPMVCMALLIVGLPVGCAVLQHKERELVFRIEPGTASWYSGLPKAVQ
EFELKPASFKSGQNIHGWWYPADKKDAPAILYLHGVRWNLTGQLFRIEQLHALGYSVLAI
DYRGFGQSRGELPSETTVYEDARIAWERFQVLQPDPSKRLIYGHSLGGAVAIDLAAELGR
QTPLPVRGLVIESTFTSLADVATAVANTSLPVRWLLSQKFNSIDKIADIRMPLLVVHGLD
DRYVPPRFSQQLFEAAQEPKRLLLVPGASHNNSMSLAGRSYGQALDKLMQAKAPPHVVTH
STGRDRDS