Protein Info for GFF3029 in Variovorax sp. SCN45

Annotation: T6SS component TssM (IcmF/VasK)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1361 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 399 to 421 (23 residues), see Phobius details PF14331: IcmF-related_N" amino acids 140 to 401 (262 residues), 180 bits, see alignment E=2.8e-57

Best Hits

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1361 amino acids)

>GFF3029 T6SS component TssM (IcmF/VasK) (Variovorax sp. SCN45)
MLTDQLFLISIAVLTLVVLLVLGMVLYFAARRSHAKPSSDPKVARIRFDSLRSSFRQAVE
LIEGNIASRADRYGIPWIMLLNEGDDHRQLPIEQSGVASALSTESASAAATQGISWHFFD
RGVVIDIQGAYLGSPDDDDASEKPWDEFLGMCRAYRPQRPFDSVVITIPAALLLDESTDG
RLELSKRAKLAHRRLWLAQNRFAMRFAVYVLITGAEQLEGFSAFARALPEPLRASMLGWS
SPYDLSTTYQPGWVDEAVGTVVRSVSDVSAELFATDTSPQGAGPQLLLPSRIEALRGQLQ
LYVDELMRPSAYHEPFFFRGIYLTGDAGESAQAVAAIDAEHDAYGRKDLEPIGGDLIAQL
MRQPAFLRDLFEKKIFLEYGLTRPSRTQTLARPVLHRALRWTAVIFLGGWGIGLVVATWQ
LHRHNSTLVSALSQLQHDAQYRMRAQQRGEAIPTAWYRNKALSLLAMNERLRTDGTYSFF
MPGSWRPFDDLNERVIERIEREFGDIAVSTLRRELMARVSQLSGVEQDEATGEFIVGASC
GLPPSFRTIGDAPRKNGLLVEDQPEFGALQRYLGSAEQLDAALQAVERLRQPSTGNAEDL
RVAVRYALGAELPADLSRNLRYFRQAAEGNALAIPLVPVQAALRCALDKGTAQLDARLFV
NNELLVSEQTLARLMPSLAGNGTFARTTASYREVIGAIKDQEDLVASGKGGWMRQPVLVL
GASYDRTIARIEQNRLLGQESADAVRGRAQDAFQKFRAEFNLRFGGAQPGLVWQDKDGRF
MLAPERIALRDALTALLAQPFMAAARDRELPGAGLRGASAWDLPRLDQALAVGDIRKRYM
SEGMTAFPPTVRPAVESALNAHFAQLVIDQVAEAATGGGDGMRPTSTALMATDTQAVAYE
ASRQRLAKIQALLYELGAGARAEDLRALVSRDALQRLEAVDEAFNQSELYAMRGRDFQGW
RGERGPMLVAFGVSDTGSLAAYLGQQFNRTETLGKLADGYIAALDGAGAGSVLAQRWQAI
NRDLERYRLKNPNSSLLLLEQFLGTTGAEIDRETCAAKLAGKAPAARLGDYFADRHQQIY
SALLARCYELQYGDQQELWTQFSTRFNRSLAGRHPFGAATTARAFDLADPADVNDLSRAF
DPLARALKESRTDGAVRTAAMPGAAARRFADQFGRTRDFLQPLFPTDDGGAPGYDLSVDF
RVNTMAEIEGNKIIDWSFEVGDQVLKQRDAPRTLRWEYGMPVALVLRIAKDSPVVARADP
QQPALLTDGQSVSFRFADPWALLTLAQRQREGDSLQRPDGRSQLLKFEFPLVAQSAGDTA
QTPAGGRARVFLRVAASPAGKKNALIWPAAFPARAPEWNTP