Protein Info for GFF3026 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1213 transmembrane" amino acids 1126 to 1143 (18 residues), see Phobius details PF13476: AAA_23" amino acids 6 to 222 (217 residues), 110.7 bits, see alignment E=3.2e-35 PF13555: AAA_29" amino acids 27 to 62 (36 residues), 28.8 bits, see alignment (E = 1.6e-10) PF13304: AAA_21" amino acids 32 to 148 (117 residues), 27.2 bits, see alignment E=8.2e-10 PF13558: SbcC_Walker_B" amino acids 1115 to 1172 (58 residues), 36.4 bits, see alignment 1e-12

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 87% identity to pfo:Pfl01_3217)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1213 amino acids)

>GFF3026 hypothetical protein (Pseudomonas sp. DMC3)
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LNNTGRDAKVPDADGEIATGDPRTLLRRGTGEGYAEVDFVGVDGRRYRARWEANRAREKA
GGKLQASRQSLRDIDQDQLLASQKGEYKTQLEAALGLNFEQFTRAVLLAQSEFSAFLKAD
DNDRSELLEKLTDTALYTRLGRRAFDKTKEAREAHKQLQDQATGVTPLAPEARAELDERF
NTAQQQMKAQQAQLKQLEQQHAWLKDLRLLQEAQQAASEQLQTAQQQWQALAGERVKLAR
LEQLGPQRHQFARKAELDALLTPLATQIAAHTQQHAALGERQTQLEQNLDAAKVALSAAQ
QRQSENAPLLRQAFEEQSTLARLIKDTASSAEARQAAEQAFKDGQSAIQALLEKQAEVTE
RLQRIATELEQSAHLAPLSDAWSAYRDRLQQLMLIGNRLNKGQSELASLEQNAAHSAEQL
ASHKQQLEVLFKEAGAEPDAVAEQIGLLGTLLQDNRKQLRAIEDLARLWASQQDLDKRSA
ELQQRQLDAQQQRERLTQDGVKTKAELTIAEQTLSVTRELLERQRLARSASVEELRAQLQ
DDQPCPVCGSNEHPYHQPEALLQSLGRHDESEQANAQQVVDQLKEKLIELRGEVGGVIAQ
QKELLQQQEQLAAQQQALAPSLDAHPLAAQLFNQDADKRDAWLSRQTEQLNQSITQDEQR
QSALLTLQQDAARLSQQLRQAEAAHQQAAQQLSHQQHELNSDRQRLEEELNAFGPLLPAD
TLEALRLEPAATFMQLDRQIAERLSQLEQQREELSEQQQRQQTLEKEQDRQQLRTQQLHS
AEQQFTALTEQQQGCQEKLAQLLGEHDSAEHWQRQLEHAVEQARVAETSTAEELQSVRTQ
LVQIAAELKAQQERLQALQAEDLVLAGKIADWRASHPELDDGGLEDLLRFDDAQVAELRQ
TLQHNEKAIEQAQVLLQERDQRLLDHQARQDGALDAEQLDSALAELQSQFAVSEQQCAEL
RAEQVEDQRRQNANQALAQQIADAYAEYQRWARLSALIGSATGDTFRKIAQAYNLDLLVH
HANAQLRQLVKRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
RRQGNGLSTLEVK